ZurekZurekMarketplace
Download
Back to catalog

foldseek-mcp

MCPReference

by AltriaPendragon49

Indexed by Glama. No runnable package is published via Glama's API — open the repository for install instructions.

mcplocal-only

MCP configuration

stdio

Environment

  • FOLDSEEK_MCP_RUN_ROOT

    Path to the root directory for search job outputs.

  • FOLDSEEK_MCP_MODEL_ROOT

    Path to the root directory for FoldSeek models (e.g., ProstT5).

  • FOLDSEEK_MCP_AUTO_DOWNLOAD

    Enable automatic download of missing databases and models. Set to 'true' or 'false'.

  • FOLDSEEK_MCP_DATABASE_ROOT

    Path to the root directory for FoldSeek databases.

  • FOLDSEEK_MCP_FOLDSEEK_BINARY

    Path to the FoldSeek binary executable. If not set, the server looks for bundled or system-installed FoldSeek.

  • FOLDSEEK_MCP_ALLOWED_INPUT_ROOTS

    Comma-separated list of allowed root directories for input file paths.

  • FOLDSEEK_MCP_MAX_AUTO_DOWNLOAD_GB

    Maximum size in GB for automatic downloads. If the download exceeds this limit, it requires confirmation.

Install in one click with Zurek

Browse here, install from the native macOS app — pick targets, fill env vars, and write configs safely.

Download for macOSAbout the Zurek app